moveHMM - Animal Movement Modelling using Hidden Markov Models
Provides tools for animal movement modelling using hidden Markov models. These include processing of tracking data, fitting hidden Markov models to movement data, visualization of data and fitted model, decoding of the state process, etc. <doi:10.1111/2041-210X.12578>.
Last updated
animal-movementhidden-markov-modelhmmmovement-ecologyopenblascpp
9.61 score 44 stars 153 scripts 723 downloadshmmTMB - Fit Hidden Markov Models using Template Model Builder
Fitting hidden Markov models using automatic differentiation and Laplace approximation, allowing for fast inference and flexible covariate effects (including random effects and smoothing splines) on model parameters. The package is described by Michelot (2025) <doi:10.18637/jss.v114.i05>.
Last updated
hidden-markov-modelhmmmixed-effects-modelsrandom-effectssmoothing-splinestime-series-analysiscpp
7.44 score 68 stars 102 scripts 311 downloads